Anmol Gorakshakar

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Systems biology work with production edges.

A timeline of platforms, models, simulations, and bench-to-computation projects from the plan. The through-line is scientific data work that turns into usable systems.

    1. Production Scoring Platform

      Viome Scoring Engine

      Built and own the central inference platform delivering every microbiome health score to Viome customers and clinicians, turning internal scientific packages into revenue-critical production infrastructure.

      120 Models integrated
      AKS Terraform KEDA CircleCI
      Platform notes
    1. Speedup Data Pipeline

      ODM Parquet sync

      Rewrote O(n2) parsing logic to O(n), cutting ODM Parquet sync from 3 days to 8 hours and shrinking a core operational bottleneck.

      3d to 8h sync time O(n) rewritten complexity
      Performance Data sync Operational leverage
    2. Internal platform Developer Tools

      DASH

      Built the internal developer platform that standardizes scoring release workflows behind compiled Python CLIs, reducing manual release effort and making deploy, rollback, notify, export, and ID translation repeatable.

      1 cmd make install onboarding 4 shipped CLI tools
      Nuitka CLI Slack Release workflow
    1. Foundation Systems Biology

      Scoring packages and Score Detail Tool

      Authored the internal Python packages for microbiome score development and built explainability tools that reduced multi-database score audits from 30+ minutes to self-service lookup.

      30m+ audit collapsed 2 core packages
      CLR CPM Quantile Streamlit
    1. Partner platform Drug Discovery

      AbbVie and Historeceptomics

      Led AbbVie-facing drug-discovery platform work, advanced 5+ leads to CRO validation, and rebuilt HR-Algorithm as a 1000x faster Python package integrated into Molsoft ICM.

      1000x algorithm speedup 5+ leads to CRO validation
      AbbVie Molsoft ICM Flask API
      Open platform

GitHub Projects

Code worth opening.

Repo pending Python

DASH

Internal developer platform for scoring releases, rollback, notification, export, ID translation, and shared CLI UX.

CLI Nuitka Release workflow
Repo pending Python

Metadata Labeler

Server pipeline and client binary for scientist-authored metadata rules, versioned regex labels, and append-only kit metadata state.

Regex rules Ledger CLI
Repo pending Flask

Score Detail Tool

Flask/HTMX tool that makes score details self-service for DS, QA, Support, Science, and Product users.

HTMX PDF export Matplotlib
Repo pending Python

VSE Tooling

Deployment, validation, rollback, and scoring pipeline tooling around the Viome Scoring Engine.

AKS Scoring CI/CD
Repo pending Flask

Historeceptomics API

Flask API and Molsoft ICM integration layer exposing the 1000x faster HR-Algorithm for external partner workflows.

API Molsoft ICM SQL